I have a program that usually runs inside a conda environmet in Linux, because I use it to manage my libraries, with this instructions:

source activate my_environment
python hello_world.py

How can I run hello_world.py in a high computer that works with PBS. Instructions explains to run adapting the code script.sh, shown below, and calling with the instruction qsub.

# script.sh
#!/bin/sh
#PBS -S /bin/sh
#PBS -N job_example
#PBS -l select=24
#PBS -j oe
cd $PBS_O_WORKDIR
mpiexec ./programa_mpi

How do I run hello_world.py with qsub using my anaconda environment?

Unless it is in the environment by default, one also needs to "load" conda as well, inside the SGE(qsub) script (similar thing would hold for a slurm script too I assume). For example I had installed conda to the directory seen below in the SGE script, so I export the path (if conda is installed as a module on an HPCC, then simply load that instead):

#!/bin/bash
#$ -q compute
#$ -l compute
#$ -cwd
#$ -N name
#$ -j yesexport PATH=$HOME/miniconda3/bin:$PATHsource activate my_environmentenvironment function code...