How to load Rs .rdata files into Python?

2024/11/15 6:09:47

I am trying to convert one part of R code in to Python. In this process I am facing some problems.

I have a R code as shown below. Here I am saving my R output in .rdata format.

nms <- names(mtcars)
save(nms,file="mtcars_nms.rdata")

Now I have to load the mtcars_nms.rdata into Python. I imported rpy2 module. Then I tried to load the file into python workspace. But could not able to see the actual output.

I used the following python code to import the .rdata.

import pandas as pd
from rpy2.robjects import r,pandas2ri
pandas2ri.activate()robj = r.load('mtcars_nms.rdata')
robj

My python output is

R object with classes: ('character',) mapped to:
<StrVector - Python:0x000001A5B9E5A288 / R:0x000001A5B9E91678>
['mtcars_nms']

Now my objective is to extract the information from mtcars_nms.

In R, we can do this by using

load("mtcars_nms.rdata");
get('mtcars_nms')

Now I wanted to do the same thing in Python.

Answer

There is a new python package pyreadr that makes very easy import RData and Rds files into python:

import pyreadrresult = pyreadr.read_r('mtcars_nms.rdata')mtcars = result['mtcars_nms']

It does not depend on having R or other external dependencies installed. It is a wrapper around the C library librdata, therefore it is very fast.

You can install it very easily with pip:

pip install pyreadr

The repo is here: https://github.com/ofajardo/pyreadr

Disclaimer: I am the developer.

https://en.xdnf.cn/q/72464.html

Related Q&A

how to set cookie in python mechanize

After sending request to the serverbr.open(http://xxxx)br.select_form(nr=0) br.form[MESSAGE] = 1 2 3 4 5br.submit()I get the response title, which has set-cookieSet-Cookie: PON=xxx.xxx.xxx.111; expir…

How can I deal with a massive delete from Django Admin?

Im working with Django 2.2.10.I have a model called Site, and a model called Record. Each record is associated with a single site (Foreign Key).After my app runs for a few days/weeks/months, each site …

What is colocate_with used for in tensorflow?

Here is the link of the official docs. https://www.tensorflow.org/versions/r1.3/api_docs/python/tf/colocate_with

Getting tkinter to work with python 3.x on macos with asdf [duplicate]

This question already has answers here:Why does tkinter (or turtle) seem to be missing or broken? Shouldnt it be part of the standard library?(4 answers)Closed 8 months ago.So Im stumped. How do I ge…

Flask server sent events socket exception

I am thinking of using SSE to push new data to the client and using Flot(javascript charting library) display "live" updates. My server runs on python Flask framework and I have figured out h…

Pandas adding scalar value to numeric column?

Given a dataframe like thisImageId | Width | Height | lb0 | x0 | y0 | lb1 | x1 | y1 | lb2 | x2 | y2 0 abc | 200 | 500 | ijk | 115| 8 | zyx | 15 | 16 | www | 23 | 42 1 def | 300 | 800 …

Sklearn Pipeline all the input array dimensions for the concatenation axis must match exactly

import pandas as pd from sklearn.feature_extraction.text import CountVectorizer, TfidfTransformer from sklearn.pipeline import Pipeline from sklearn.svm import LinearSVC from sklearn.preprocessing impo…

Python Pandas read_excel returns empty Dataframe

Reading a simple xls returning empty dataframe, cant figure it out for the life of me:path = (c:/Users/Desktop/Stuff/Ready) files = os.listdir(path) print(files)files_xlsx = [f for f in files if f[-3:]…

Fill matrix with transposed version

I have a pairwise matrix:>>> ma b c d a 1.0 NaN NaN NaN b 0.5 1.0 NaN NaN c 0.6 0.0 1.0 NaN d 0.5 0.4 0.3 1.0I want to replace the NaN in the the top right with the same va…

Subclass of numpy ndarray doesnt work as expected

`Hello, everyone.I found there is a strange behavior when subclassing a ndarray.import numpy as npclass fooarray(np.ndarray):def __new__(cls, input_array, *args, **kwargs):obj = np.asarray(input_array)…