Greedy String Tiling in Python

2024/11/16 4:46:55

I am trying to learn greedy string tiling in algorithm

I have two lists as follows:

a=['a','b','c','d','e','f']
b=['d','e','a','b','c','f']

i would like to retrieve c=['a','b','c','d','e']

Another example would be

a = ['1','2','3','4','5','6','7','8','9','1','3']
b = ['3','4','5','2','1','7','8','9','1']

c should be ['3','4','5','7','8','9','1']

Right now I am using the following code which works for the latter example but not the former. Can someone help?

def gct(a, b):if len(a) == 0 or len(b) == 0:return []if a[0] == b[0]:return [a[0]] + gct(a[1:], b[1:])return max(gct(a, b[1:]), gct(a[1:], b), key=len)

I am calling function with

gct( ['a','b','c','d','e','f'], ['d','e','a','b','c','f'] )

which gives ['a', 'b', 'c', 'f'], when it should be ['a','b','c','d','e'] or ['d','e','a','b','c'].

P.S The order doesn't matter in the printing of the result. The order is only important while doing the comparisons. The minimum pattern length should be 2

NOTE intersect will not solve my problem

Answer

The following codes can solve the problem. A minlength is added to make sure the substr >= minlength.

  • maxsub is used to find the longest substr and return its index in string a.
  • markit.a is used to mark the char position found before in string a.
  • while loop is used to find all the substr (len>=minlength)

^

#! /usr/bin/env python
a=['a','b','c','d','e','f']
b=['d','e','a','b','c','f']a = ['1','2','3','4','5','6','7','8','9','1','3']
b = ['3','4','5','2','1','7','8','9','1']def gct(a,b,minlength=2):if len(a) == 0 or len(b) == 0:return []# if py>3.0, nonlocal is betterclass markit:a=[0]minlen=2markit.a=[0]*len(a)markit.minlen=minlength#output char indexout=[]# To find the max length substr (index)# apos is the position of a[0] in origin stringdef maxsub(a,b,apos=0,lennow=0):if (len(a) == 0 or len(b) == 0):return []if (a[0]==b[0] and markit.a[apos]!=1 ):return [apos]+maxsub(a[1:],b[1:],apos+1,lennow=lennow+1)elif (a[0]!=b[0] and lennow>0):return []return max(maxsub(a, b[1:],apos), maxsub(a[1:], b,apos+1), key=len)while True:findmax=maxsub(a,b,0,0)if (len(findmax)<markit.minlen):breakelse:for i in findmax:markit.a[i]=1out+=findmaxreturn [ a[i] for i in out]print gct(a,b)
>> ['a', 'b', 'c', 'd', 'e']
>> ['7', '8', '9', '1', '3', '4', '5']
print gct(a,b,3)
>> ['a', 'b', 'c']
>> ['7', '8', '9', '1', '3', '4', '5']
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